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Eleanor Smith
Life Sciences Librarian
919-513-3969

Fungi: from alternaria to yarrowia

Featured Articles:

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

Martin F, Aerts A, Ahren D, et al.
NATURE 452(7183):88-U7, MARCH 6, 2008

The evolutionary history of Cytochrome P450 genes in four filamentous Ascomycetes

Deng JX, Carbone I, and Dean, RA (NCSU).
BMC EVOLUTIONARY BIOLOGY 7, Article 30, February 26, 2007

Genome and EST Sequence Data for Fungi

See also, Plant Pathogens page, and Saccharomyces links in Model Organisms page.
(Coming Soon: Proteome data)

Species	Data Type/ Completeness	Source and URL
Alternaria brassicicola	Genome	Genome Sequencing Center, Washington University http://genome.wustl.edu/genome.cgi?GENOME= Alternaria brassicicola
Ashbya gossypii	Annotated Genome	AGD: AshBya Genome Database http://agd.unibas.ch/
Aspergillus flavus	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=a_flavus
Aspergillus fumigatus	Genome	TIGR http://www.tigr.org/tdb/e2k1/afu1/
Aspergillus fumigatus	Genome	Sanger http://www.sanger.ac.uk/Projects/A_fumigatus/
Aspergillus fumigatus	Annotated Genome	GeneDB http://www.genedb.org/genedb/asp/
Aspergillus niger	Annotated Genome	JGI http://genome.jgi-psf.org/Aspni1/Aspni1.home.html
Aspergillus nidulans	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ aspergillus_nidulans/Home.html
Aspergillus nidulans	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=a_nidulans
Aspergillus terreus	Annotated Genome	Fungal Genome Initative, Broad Institute http://www.broad.mit.edu/annotation/genome/ aspergillus_terreus/Home.html
Botrytis cinerea	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ botrytis_cinerea/Home.html

Candida albicans	Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ candida_albicans/Home.html/
Candida dubliniensis	Genome	Sanger http://www.sanger.ac.uk/sequencing/Candida/dubliniensis/
Candida dubliniensis	Annotated Genome	GeneDB http://www.genedb.org/genedb/cdubliniensis/
Candida glabrata	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?id=284593
Candida guilliermondii	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ candida_guilliermondii/Home.html
Candida lusitaniae	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ candida_lusitaniae/Home.html
Candida parapsilosis	Genome	Sanger http://www.sanger.ac.uk/sequencing/Candida/parapsilosis/
Candida tropicalis	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ candida_tropicalis/Home.html
Chaetomium globosum	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ chaetomium_globosum/Home.html
Coccidioides immitis	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ coccidioides_immitis/Home.html
Coccidioides posadasii	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi? species=c_immitis
Coprinus cinereus	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ coprinus_cinereus/Home.html
Cryptococcus neoformans var. neoformans JEC21	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/ Browser/wwwtax.cgi?mode=Info&id= 214684&lvl=3&lin=f&keep=1&srchmode=1&unlock
Cryptococcus neoformans	Genome	TIGR http://www.tigr.org/tdb/e2k1/can1/
Cryptococcus	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi? species=cryptococcus
Cryptococcus neoformans serotype A	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ cryptococcus_neoformans/Home.html
Cryptococcus neoformans serotype B	Genome Sequence	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ cryptococcus_neoformans_b/Home.html

Debaryomyces hansenii CBS767	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Info&id=284592&lvl=3&lin= f&keep=1&srchmode=1&unlock
Encephalitozoon cuniculi	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Info&id=6035&lvl=3&lin=f&keep =1&srchmode=1&unlock
Eremothecium gossypii ATCC 10895	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Info&id=284811&lvl=3&lin=f&keep =1&srchmode=1&unlock
Fusarium graminearum	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ fusarium_graminearum/Home.html
Fusarium graminearum	Annotated Genome	MIPS http://mips.gsf.de/genre/proj/fusarium/
Fusarium verticillioides	Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ fusarium_verticillioides/Home.html
Fusarium verticillioides	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=f_verticill
Histoplasma capsulatum	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ histoplasma_capsulatum/Home.html
Kluyveromyces lactis	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Info&id=28985&lvl=3&lin= f&keep=1&srchmode=1&unlock
Laccaria bicolor	Annotated Genome	JGI http://genome.jgi-psf.org/Lacbi1/Lacbi1.home.html
Lodderomyces elongisporus	Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ lodderomyces_elongisporus/Home.html

Magnaporthe grisea	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ magnaporthe_grisea/Home.html
Magnaporthe grisea	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=m_grisea
Nectria haematococca	Annotated Genome	JGI http://genome.jgi-psf.org/Necha1/Necha1.home.html
Neurospora crassa	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ neurospora/Home.html
Neurospora crassa	Annotated Genome	MIPS http://mips.gsf.de/genre/proj/ncrassa/
Neurospora crassa	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=neurospora
Phanerochaete chrysosporium	Annotated Genome	JGI http://genome.jgi-psf.org/Phchr1/Phchr1.home.html
Pichia stipitis	Genome	JGI http://genome.jgi-psf.org/Picst3/Picst3.home.html
Phycomyces	Genome Assembly (4X)	EMBnet http://www.es.embnet.org/~genus/phycomyces.html
Phytophthora infestans	BAC Sequence	Sanger http://www.sanger.ac.uk/Projects/P_infestans/
Phytophthora ramorum	Annotated Genome	JGI http://genome.jgi-psf.org/ramorum1/ramorum1.home.html
Phytophthora sojae	Annotated Genome	JGI http://genome.jgi-psf.org/sojae1/sojae1.home.html
Rhizobium leguminosarum biovar viciae 3841	Genome	Sanger http://www.sanger.ac.uk/Projects/R_leguminosarum/
Rhizopus oryzae	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ rhizopus_oryzae/Home.html

Saccharomyces cerevisiae (RM11-1a)	Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ saccharomyces_cerevisiae/Home.html
Saccharomyces cerevisiae	Annotated Genome	MIPS http://mips.gsf.de/genre/proj/yeast/
Saccharomyces cerevisiae	Annotated Genome	GeneDB http://www.genedb.org/genedb/cerevisiae/
Saccharomyces cerevisiae S288c	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Undef&name=Saccharomyces+ cerevisiae&lvl=0&srchmode=1
Saccharomyces cerevisiae	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=yeast
Schizosaccharomyces pombe	Annotated Genome	GeneDB http://www.genedb.org/genedb/pombe/
Schizosaccharomyces pombe	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Info&id=4896&lvl=3&lin= f&keep=1&srchmode=1&unlock
Schizo- saccharomyces pombe	EST assembly	TIGR Gene Index http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=f_yeast
Sclerotinia sclerotiorum	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ sclerotinia_sclerotiorum/Home.html
Stagonospora nodorum	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ stagonospora_nodorum/Home.html

Trichoderma reesei	Annotated Genome	JGI http://gsphere.lanl.gov/trire1/trire1.home.html
Uncinocarpus reesii	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ uncinocarpus_reesii/Home.html
Ustilago maydis	Annotated Genome	Fungal Genome Initiative, Broad Institute http://www.broad.mit.edu/annotation/genome/ ustilago_maydis/Home.html
Ustilago maydis	Annotated Genome	MIPS http://mips.gsf.de/genre/proj/ustilago/
Yarrowia lipolytica CLIB122	Complete genome; genes; proteins	NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ wwwtax.cgi?mode=Info&id=4952&lvl=3&lin= f&keep=1&srchmode=1&unlock